Identifying analogues of 2-deoxyglucose, alpha-d-glucose and beta-d-glucose-6-phosphate as potential inhibitors of human hexokinase ii for the development of anti-dengue therapeutics
The human hexokinase isoform II (HKII) is one of the important enzymes for dengue virus (DENV) replication and thus has been suggested as a potential therapeutic target for DENV drug development. In this work, compounds were identified using Ultrafast Shape Recognition with CREDO Atom Types (USRCAT)...
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Universiti Putra Malaysia Press
2019
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| Online Access: | http://irep.iium.edu.my/79647/ http://irep.iium.edu.my/79647/ http://irep.iium.edu.my/79647/1/79647_Identifying%20Analogues%20Of%202-Deoxyglucose.pdf http://irep.iium.edu.my/79647/2/79647_Identifying%20Analogues%20Of%202-Deoxyglucose_SCOPUS.pdf http://irep.iium.edu.my/79647/3/79647_Identifying%20Analogues%20Of%202-Deoxyglucose_WOS.pdf |
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iium-796472020-03-19T05:58:07Z http://irep.iium.edu.my/79647/ Identifying analogues of 2-deoxyglucose, alpha-d-glucose and beta-d-glucose-6-phosphate as potential inhibitors of human hexokinase ii for the development of anti-dengue therapeutics Tanbin, Suriyea Ogu Salim, Nurhainis Ahmad Fuad, Fazia Adyani TP Chemical technology TP248.13 Biotechnology The human hexokinase isoform II (HKII) is one of the important enzymes for dengue virus (DENV) replication and thus has been suggested as a potential therapeutic target for DENV drug development. In this work, compounds were identified using Ultrafast Shape Recognition with CREDO Atom Types (USRCAT) by utilizing both HKII’s substrate and product; alpha-D-glucose (GLC) and beta-D-glucose-6-phosphate (BG6), as well as a known HKII’s inhibitor, 2-deoxyglucose (2DG), as the query molecules. The analogues of the three query molecules were subsequently docked against the HKII’s crystal structure (PDB ID: 2NZT) by using Auto Dock 4 program on Chain B, where the active sites and strong bonds were located. Among the top-ranked compounds, Compound 4 (ZINC26898487), which was the most similar to 2DG, showed the best binding energy (-7.63 kcal/mol) and contained two H bonds. Compound 9 (ZINC16930948), an analogue of GLC emerged as the best inhibitor candidate because it had six H bonds. Similarly, among the molecules similar to BG6, Compound 14 (ZINC4403351) had been suggested as a potential inhibitor because it contained four strong H bonds. All compounds were predicted to be non-toxic, based on Toxicity Estimation Software Tool (TEST) analysis. By providing these valuable findings, this study has paved the way for the discovery of compounds that should be further tested for the development of anti-dengue drugs. © 2019, Universiti Putra Malaysia Press. All rights reserved. Universiti Putra Malaysia Press 2019-10 Article PeerReviewed application/pdf en http://irep.iium.edu.my/79647/1/79647_Identifying%20Analogues%20Of%202-Deoxyglucose.pdf application/pdf en http://irep.iium.edu.my/79647/2/79647_Identifying%20Analogues%20Of%202-Deoxyglucose_SCOPUS.pdf application/pdf en http://irep.iium.edu.my/79647/3/79647_Identifying%20Analogues%20Of%202-Deoxyglucose_WOS.pdf Tanbin, Suriyea and Ogu Salim, Nurhainis and Ahmad Fuad, Fazia Adyani (2019) Identifying analogues of 2-deoxyglucose, alpha-d-glucose and beta-d-glucose-6-phosphate as potential inhibitors of human hexokinase ii for the development of anti-dengue therapeutics. Pertanika Journal of Science and Technology, 27 (4). pp. 1625-1647. ISSN 0128-7680 http://www.pertanika.upm.edu.my/Pertanika%20PAPERS/JST%20Vol.%2027%20(4)%20Oct.%202019/11%20JST-1644-2019.pdf |
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Digital Repository |
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International Islamic University Malaysia |
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Online Access |
| language |
English English English |
| topic |
TP Chemical technology TP248.13 Biotechnology |
| spellingShingle |
TP Chemical technology TP248.13 Biotechnology Tanbin, Suriyea Ogu Salim, Nurhainis Ahmad Fuad, Fazia Adyani Identifying analogues of 2-deoxyglucose, alpha-d-glucose and beta-d-glucose-6-phosphate as potential inhibitors of human hexokinase ii for the development of anti-dengue therapeutics |
| description |
The human hexokinase isoform II (HKII) is one of the important enzymes for dengue virus (DENV) replication and thus has been suggested as a potential therapeutic target for DENV drug development. In this work, compounds were identified using Ultrafast Shape Recognition with CREDO Atom Types (USRCAT) by utilizing both HKII’s substrate and product; alpha-D-glucose (GLC) and beta-D-glucose-6-phosphate (BG6), as well as a known HKII’s inhibitor, 2-deoxyglucose (2DG), as the query molecules. The analogues of the three query molecules were subsequently docked against the HKII’s crystal structure (PDB ID: 2NZT) by using Auto Dock 4 program on Chain B, where the active sites and strong bonds were located. Among the top-ranked compounds, Compound 4 (ZINC26898487), which was the most similar to 2DG, showed the best binding energy (-7.63 kcal/mol) and contained two H bonds. Compound 9 (ZINC16930948), an analogue of GLC emerged as the best inhibitor candidate because it had six H bonds. Similarly, among the molecules similar to BG6, Compound 14 (ZINC4403351) had been suggested as a potential inhibitor because it contained four strong H bonds. All compounds were predicted to be non-toxic, based on Toxicity Estimation Software Tool (TEST) analysis. By providing these valuable findings, this study has paved the way for the discovery of compounds that should be further tested for the development of anti-dengue drugs. © 2019, Universiti Putra Malaysia Press. All rights reserved. |
| format |
Article |
| author |
Tanbin, Suriyea Ogu Salim, Nurhainis Ahmad Fuad, Fazia Adyani |
| author_facet |
Tanbin, Suriyea Ogu Salim, Nurhainis Ahmad Fuad, Fazia Adyani |
| author_sort |
Tanbin, Suriyea |
| title |
Identifying analogues of 2-deoxyglucose, alpha-d-glucose and beta-d-glucose-6-phosphate as potential inhibitors of human hexokinase ii for the development of anti-dengue therapeutics |
| title_short |
Identifying analogues of 2-deoxyglucose, alpha-d-glucose and beta-d-glucose-6-phosphate as potential inhibitors of human hexokinase ii for the development of anti-dengue therapeutics |
| title_full |
Identifying analogues of 2-deoxyglucose, alpha-d-glucose and beta-d-glucose-6-phosphate as potential inhibitors of human hexokinase ii for the development of anti-dengue therapeutics |
| title_fullStr |
Identifying analogues of 2-deoxyglucose, alpha-d-glucose and beta-d-glucose-6-phosphate as potential inhibitors of human hexokinase ii for the development of anti-dengue therapeutics |
| title_full_unstemmed |
Identifying analogues of 2-deoxyglucose, alpha-d-glucose and beta-d-glucose-6-phosphate as potential inhibitors of human hexokinase ii for the development of anti-dengue therapeutics |
| title_sort |
identifying analogues of 2-deoxyglucose, alpha-d-glucose and beta-d-glucose-6-phosphate as potential inhibitors of human hexokinase ii for the development of anti-dengue therapeutics |
| publisher |
Universiti Putra Malaysia Press |
| publishDate |
2019 |
| url |
http://irep.iium.edu.my/79647/ http://irep.iium.edu.my/79647/ http://irep.iium.edu.my/79647/1/79647_Identifying%20Analogues%20Of%202-Deoxyglucose.pdf http://irep.iium.edu.my/79647/2/79647_Identifying%20Analogues%20Of%202-Deoxyglucose_SCOPUS.pdf http://irep.iium.edu.my/79647/3/79647_Identifying%20Analogues%20Of%202-Deoxyglucose_WOS.pdf |
| first_indexed |
2023-09-18T21:51:38Z |
| last_indexed |
2023-09-18T21:51:38Z |
| _version_ |
1777413808561586176 |