Single-stage DNA splicing system via Yusof-Goode approach

Yusof-Goode (Y-G) rule is the new translucent way representing the rule in splicing system under the framework of formal language theory. The motivation behind using the Y-G approach is to simulate the actual recombinant behaviours of deoxyribonucleic acid (DNA) molecules. The current laboratory exp...

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Main Author:	Wen Li, Lim
Format:	Thesis
Language:	English English English
Published:	2015
Subjects:	QA Mathematics
Online Access:	http://umpir.ump.edu.my/id/eprint/10979/ http://umpir.ump.edu.my/id/eprint/10979/ http://umpir.ump.edu.my/id/eprint/10979/1/FIST%20-%20LIM%20WEN%20LI%20%28CD8908%29.pdf http://umpir.ump.edu.my/id/eprint/10979/2/FIST%20-%20LIM%20WEN%20LI%20%28CD8908%29%20CHAP%201.pdf http://umpir.ump.edu.my/id/eprint/10979/3/FIST%20-%20LIM%20WEN%20LI%20%28CD8908%29%20CHAP%203.pdf

id	ump-10979
recordtype	eprints
spelling	ump-109792015-11-03T03:41:21Z http://umpir.ump.edu.my/id/eprint/10979/ Single-stage DNA splicing system via Yusof-Goode approach Wen Li, Lim QA Mathematics Yusof-Goode (Y-G) rule is the new translucent way representing the rule in splicing system under the framework of formal language theory. The motivation behind using the Y-G approach is to simulate the actual recombinant behaviours of deoxyribonucleic acid (DNA) molecules. The current laboratory experimental approaches to obtain the product of the DNA splicing process involve time and cost with high probability of not getting the desired results. Hence, in this research, a mathematical concept of single-stage splicing language restricted to at most two non-palindromic initial strings and two rules with one recognition site is introduced via Y-G model. In addition, the characteristics of rule are investigated by providing mathematical proofs. Based on the characteristics of rule, some theorems and lemmas have been formulated to predict the number types of single-stage splicing language of Y-G splicing system. Furthermore, in order to determine the characterizations of single-stage splicing language, a model is developed via limit adjacency matrix approach. The limit adjacency matrix can also be used to predict the number types of transient, inert persistent and active persistent limit language. Finally, a graphic user interface and a computational model of single-stage limit language are developed using Microsoft Visual Basic (VB) programming code focusing on prediction of the conceivable resulted molecules, the number types of single-stage splicing language as well as the behaviours of single-stage splicing language 2015-04 Thesis NonPeerReviewed application/pdf en http://umpir.ump.edu.my/id/eprint/10979/1/FIST%20-%20LIM%20WEN%20LI%20%28CD8908%29.pdf application/pdf en http://umpir.ump.edu.my/id/eprint/10979/2/FIST%20-%20LIM%20WEN%20LI%20%28CD8908%29%20CHAP%201.pdf application/pdf en http://umpir.ump.edu.my/id/eprint/10979/3/FIST%20-%20LIM%20WEN%20LI%20%28CD8908%29%20CHAP%203.pdf Wen Li, Lim (2015) Single-stage DNA splicing system via Yusof-Goode approach. Masters thesis, Universiti Malaysia Pahang. http://iportal.ump.edu.my/lib/item?id=chamo:91333&theme=UMP2
repository_type	Digital Repository
institution_category	Local University
institution	Universiti Malaysia Pahang
building	UMP Institutional Repository
collection	Online Access
language	English English English
topic	QA Mathematics
spellingShingle	QA Mathematics Wen Li, Lim Single-stage DNA splicing system via Yusof-Goode approach
description	Yusof-Goode (Y-G) rule is the new translucent way representing the rule in splicing system under the framework of formal language theory. The motivation behind using the Y-G approach is to simulate the actual recombinant behaviours of deoxyribonucleic acid (DNA) molecules. The current laboratory experimental approaches to obtain the product of the DNA splicing process involve time and cost with high probability of not getting the desired results. Hence, in this research, a mathematical concept of single-stage splicing language restricted to at most two non-palindromic initial strings and two rules with one recognition site is introduced via Y-G model. In addition, the characteristics of rule are investigated by providing mathematical proofs. Based on the characteristics of rule, some theorems and lemmas have been formulated to predict the number types of single-stage splicing language of Y-G splicing system. Furthermore, in order to determine the characterizations of single-stage splicing language, a model is developed via limit adjacency matrix approach. The limit adjacency matrix can also be used to predict the number types of transient, inert persistent and active persistent limit language. Finally, a graphic user interface and a computational model of single-stage limit language are developed using Microsoft Visual Basic (VB) programming code focusing on prediction of the conceivable resulted molecules, the number types of single-stage splicing language as well as the behaviours of single-stage splicing language
format	Thesis
author	Wen Li, Lim
author_facet	Wen Li, Lim
author_sort	Wen Li, Lim
title	Single-stage DNA splicing system via Yusof-Goode approach
title_short	Single-stage DNA splicing system via Yusof-Goode approach
title_full	Single-stage DNA splicing system via Yusof-Goode approach
title_fullStr	Single-stage DNA splicing system via Yusof-Goode approach
title_full_unstemmed	Single-stage DNA splicing system via Yusof-Goode approach
title_sort	single-stage dna splicing system via yusof-goode approach
publishDate	2015
url	http://umpir.ump.edu.my/id/eprint/10979/ http://umpir.ump.edu.my/id/eprint/10979/ http://umpir.ump.edu.my/id/eprint/10979/1/FIST%20-%20LIM%20WEN%20LI%20%28CD8908%29.pdf http://umpir.ump.edu.my/id/eprint/10979/2/FIST%20-%20LIM%20WEN%20LI%20%28CD8908%29%20CHAP%201.pdf http://umpir.ump.edu.my/id/eprint/10979/3/FIST%20-%20LIM%20WEN%20LI%20%28CD8908%29%20CHAP%203.pdf
first_indexed	2023-09-18T22:11:13Z
last_indexed	2023-09-18T22:11:13Z
_version_	1777415040748486656

Single-stage DNA splicing system via Yusof-Goode approach

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