Parallel implementation of genomic sequences classification using modified gabor wavelet transform on multicore systems

High processing time is required to classify genomic sequences and to identify protein coding of a DNA sequence. While computer performance has been driven largely by decreasing the size of chips while increasing the number of transistors they contain, the current computing trend is multicore system...

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Main Authors:	Gunawan, Teddy Surya, Ambikairajah, Eliathamby
Format:	Conference or Workshop Item
Language:	English
Published:	2012
Subjects:	TA164 Bioengineering
Online Access:	http://irep.iium.edu.my/27187/ http://irep.iium.edu.my/27187/4/Parallel_implementation_of_genomic_sequences.pdf

id	iium-27187
recordtype	eprints
spelling	iium-271872013-02-15T07:40:13Z http://irep.iium.edu.my/27187/ Parallel implementation of genomic sequences classification using modified gabor wavelet transform on multicore systems Gunawan, Teddy Surya Ambikairajah, Eliathamby TA164 Bioengineering High processing time is required to classify genomic sequences and to identify protein coding of a DNA sequence. While computer performance has been driven largely by decreasing the size of chips while increasing the number of transistors they contain, the current computing trend is multicore system in which two or more independent cores are integrated into a single package. This paper presents the parallel implementation of the gene and exon identification of DNA sequences using the previously developed modified Gabor wavelet transform on multicore systems. Single Program Multiple Data (SPMD) parallel paradigm will be used in the parallel implementation. Furthermore, the efficiency of the proposed algorithm will be analyzed using Amdahl’s law. 2012-02-27 Conference or Workshop Item PeerReviewed application/pdf en http://irep.iium.edu.my/27187/4/Parallel_implementation_of_genomic_sequences.pdf Gunawan, Teddy Surya and Ambikairajah, Eliathamby (2012) Parallel implementation of genomic sequences classification using modified gabor wavelet transform on multicore systems. In: International Conference on Biomedical Engineering (ICoBE2012), 27-28 Feb 2012, Penang. (Unpublished)
repository_type	Digital Repository
institution_category	Local University
institution	International Islamic University Malaysia
building	IIUM Repository
collection	Online Access
language	English
topic	TA164 Bioengineering
spellingShingle	TA164 Bioengineering Gunawan, Teddy Surya Ambikairajah, Eliathamby Parallel implementation of genomic sequences classification using modified gabor wavelet transform on multicore systems
description	High processing time is required to classify genomic sequences and to identify protein coding of a DNA sequence. While computer performance has been driven largely by decreasing the size of chips while increasing the number of transistors they contain, the current computing trend is multicore system in which two or more independent cores are integrated into a single package. This paper presents the parallel implementation of the gene and exon identification of DNA sequences using the previously developed modified Gabor wavelet transform on multicore systems. Single Program Multiple Data (SPMD) parallel paradigm will be used in the parallel implementation. Furthermore, the efficiency of the proposed algorithm will be analyzed using Amdahl’s law.
format	Conference or Workshop Item
author	Gunawan, Teddy Surya Ambikairajah, Eliathamby
author_facet	Gunawan, Teddy Surya Ambikairajah, Eliathamby
author_sort	Gunawan, Teddy Surya
title	Parallel implementation of genomic sequences classification using modified gabor wavelet transform on multicore systems
title_short	Parallel implementation of genomic sequences classification using modified gabor wavelet transform on multicore systems
title_full	Parallel implementation of genomic sequences classification using modified gabor wavelet transform on multicore systems
title_fullStr	Parallel implementation of genomic sequences classification using modified gabor wavelet transform on multicore systems
title_full_unstemmed	Parallel implementation of genomic sequences classification using modified gabor wavelet transform on multicore systems
title_sort	parallel implementation of genomic sequences classification using modified gabor wavelet transform on multicore systems
publishDate	2012
url	http://irep.iium.edu.my/27187/ http://irep.iium.edu.my/27187/4/Parallel_implementation_of_genomic_sequences.pdf
first_indexed	2023-09-18T20:40:25Z
last_indexed	2023-09-18T20:40:25Z
_version_	1777409327842197504

Parallel implementation of genomic sequences classification using modified gabor wavelet transform on multicore systems

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